List of publications

List of Publications (Journals and Book Chapters)

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44. Dolatabadi S, Candia J, Akrap N, Vannas C, Tomic TT, Losert W, Landberg G, Aman P, Stahlberg A, Cell cycle and cell size dependent gene expression reveals distinct subpopulations at single-cell level (to appear in Frontiers in Genetics).

43. Lau WW, Sparks R, OMiCC Jamboree Working Group, Tsang JS, Meta-analysis of crowdsourced data compendia suggests pan-disease transcriptional signatures of autoimmunity [open review]. F1000Research 5:2884 (2016).

42. Chen D, Sarkar S, Candia J, Florczyk SJ, Bodhak S, Driscoll MK, Simon Jr CG, Dunkers JP, Losert W, Machine Learning Based Methodology to Identify Cell Shape Phenotypes Associated with Microenvironmental Cues, Biomaterials 104, 104-118 (2016).

41. Candia J, Cherukuri S, Guo Y, Doshi KA, Banavar JR, Civin CI, Losert W, Uncovering low-dimensional, miR-based signatures of acute myeloid and lymphoblastic leukemias with a machine-learning-driven network approach, Convergent Science Physical Oncology 1, 025002 (2015).

40. Goswami M, McGowan KS, Lu K, Jain N, Candia J, Hensel NF, Tang J, Calvo KR, Battiwalla M, Barrett AJ, Hourigan CS, A multigene array for measurable residual disease detection in AML patients undergoing SCT, Bone Marrow Transplantation 1-10 (2015).

39. Candia J, Banavar JR, Losert W, Uncovering Phenotypes with Supercells: Applications to Single-Cell Sequencing. In: X. Wang (Ed.), Single Cell Sequencing and Systems Immunology, Translational Bioinformatics (Vol. 5), ISBN 978-94-017-9752-8, ISBN 978-94-017-9753-5 (eBook), Springer (2015), Chapter 2.

38. Candia J, Banavar JR, Losert W, Understanding Health and Disease with Multidimensional Single-Cell Methods, Journal of Physics: Condensed Matter 26, 073102 (2014).

37. Candia J, Maunu R, Driscoll M, Biancotto A, Dagur P, McCoy Jr JP, Sen HN, Wei L, Maritan A, Cao K, Nussenblatt RB, Banavar JR, Losert W, From Cellular Characteristics to Disease Diagnosis: Uncovering Phenotypes with Supercells, PLoS Computational Biology 9(9): e1003215 (2013).

36. Mazzitello KI, Candia J, Albano EV, Far-from-equilibrium growth of magnetic thin films with Blume-Capel impurities, Physical Review E 91, 042118 (2015).

35. Baglietto G, Albano EV, Candia J, Complex Network Structure of Flocks in the Vicsek Model with Vectorial Noise , International Journal of Modern Physics C 25, 1350095 (2014).

34. Loscar ES, Candia J, Stochastic Resonance and Dynamic First-Order Pseudo-Phase Transitions in the Irreversible Growth of Thin Films under Spatially Periodic Magnetic Fields, Physical Review E 88, 042412 (2013).

33. Baglietto G, Albano EV, Candia J, Complex Network Structure of Flocks in the Standard Vicsek Model , Journal of Statistical Physics 153, 270 (2013).

32. Baglietto G, Albano EV, and Candia J, Gregarious vs Individualistic Behavior in Vicsek Swarms and the Onset of First-Order Phase Transitions, Physica A 392, 3240 (2013)

31. Candia J, Albano EV, Nonequilibrium critical behavior of magnetic thin films grown in a temperature gradient, Journal of Statistical Mechanics: Theory and Experiment P08006 (2012)

30. Baglietto G, Albano EV, Candia J, Criticality and the Onset of Ordering in the Standard Vicsek Model, Interface Focus 2, 708 (2012)

29. Mazzitello K, Candia J, Diffusion-Based Density-Equalizing Maps: an Interdisciplinary Approach to Visualizing Homicide Rates and Other Georeferenced Statistical Data, Brazilian Journal of Physics 42, 365 (2012)

28. Candia J, Albano EV, Far-from-equilibrium growth of thin films in a temperature gradient, Physical Review E 84, 050601 (Rapid Communication) (2011)

27. Pawling A, Yan P, Candia J, Schoenharl T, Madey G, Anomaly detection in streaming sensor data. Chapter in "Intelligent Techniques for Warehousing and Mining Sensor Network Data", A. Cuzzocrea (Editor), ISBN13: 9781605663289 IGI Global, Hershey PA (2010)

26. Candia J, Advertising and irreversible opinion spreading in complex social networks, International Journal of Modern Physics C 20, 799 (2009)

25. Candia J, Albano EV, The Magnetic Eden Model, International Journal of Modern Physics C 19, 1617 (2008)

24. Candia J, Mazzitello K, Mass media influence spreading in social networks with community structure, Journal of Statistical Mechanics: Theory and Experiment P07007 (2008)

23. Candia J, González MC, Wang P, Schoenharl T, Madey G, Barabási A-L, Uncovering individual and collective human dynamics from mobile phone records, Journal of Physics A: Mathematical and Theoretical 41, 224015 (2008)

22. Parris PE, Candia J, Kenkre VM, Random walk access times on partially-disordered complex networks: an effective medium theory, Physical Review E 77, 061113 (2008)

21. Candia J, Nonequilibrium opinion spreading on 2D small-world networks, Journal of Statistical Mechanics: Theory and Experiment P09001 (2007)

20. Candia J, Parris PE, and Kenkre VM, Transport properties of random walks on scale-free/regular-lattice hybrid networks, Journal of Statistical Physics 129, 323 (2007)

19. K. Mazzitello, J. Candia, and V. Dossetti, Effects of mass media and cultural drift in a model for social influence , International Journal of Modern Physics C 18, 1475 (2007)

18. J. Candia, Irreversible opinion spreading on scale-free networks, Physical Review E 75, 026110 (2007)

17. J. Candia, Irreversible growth of binary mixtures on small-world networks, Physical Review E 74, 031101 (2006)

16. V. Manías, J. Candia and E.V. Albano, Corner wetting in a far-from-equilibrium magnetic growth model, European Physical Journal B 47, 563 (2005)

15. J. Candia, Detectable neutrino fluxes due to enhanced cosmic ray densities in the Galactic Center region, Journal of Cosmology and Astroparticle Physics 11, 002 (2005)

14. J.F. Beacom and J. Candia, Shower power: Isolating the prompt atmospheric neutrino flux using electron neutrinos, Journal of Cosmology and Astroparticle Physics 11, 009 (2004)

13. J. Candia and E. Roulet, Diffusion and drift of cosmic rays in highly turbulent magnetic fields, Journal of Cosmology and Astroparticle Physics 10, 007 (2004)

12. J. Candia and E.V. Albano, Order-disorder criticality, wetting, and morphological phase transitions in the irreversible growth of far-from-equilibrium magnetic films, Journal of Magnetism and Magnetic Materials 260, 338 (2003)

11. J. Candia and E. Roulet, Rigidity dependent knee and cosmic ray induced high energy neutrino fluxes, Journal of Cosmology and Astroparticle Physics 09, 005 (2003)

10. J. Candia, S. Mollerach, and E. Roulet, Cosmic ray spectrum and anisotropies from the knee to the second knee, Journal of Cosmology and Astroparticle Physics 05, 003 (2003)

9. J. Candia and E.V. Albano, Quasi-wetting and morphological phase transitions in confined far-from-equilibrium magnetic thin films , Journal of Chemical Physics 117, 6699 (2002)

8. J. Candia, S. Mollerach, and E. Roulet, Cosmic ray drift, the second knee and galactic anisotropies , Journal of High Energy Physics 12, 32 (2002)

7. J. Candia, E. Roulet, and L.N. Epele, Turbulent diffusion and drift in galactic magnetic fields and the explanation of the knee in the cosmic ray spectrum , Journal of High Energy Physics 12, 33 (2002)

6. J. Candia and E.V. Albano, Interfacial phase transitions in a far-from-equilibrium magnetic growth model , Journal of Physics: Condensed Matter 14, 4927 (2002)

5. J. Candia and E.V. Albano, Irreversible growth of a binary mixture confined in a thin film geometry with competing walls , Physical Review Letters 88, 016103 (2002)

4. J. Candia, L.N. Epele and E. Roulet, Cosmic ray photodisintegration and the knee of the spectrum , Astroparticle Physics 17, 23 (2002)

3. J. Candia and E.V. Albano, Monte Carlo simulation of the irreversible growth of magnetic thin films , Journal of Applied Physics 90, 5395 (2001)

2. J. Candia and E.V. Albano, Comparative study of an Eden model for the irreversible growth of spins and the equilibrium Ising model , Physical Review E 63, 066127 (2001)

1. J. Candia and E.V. Albano, Non-equilibrium wetting transition in a magnetic Eden model , European Physical Journal B 16, 531 (2000)

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